By Falko Dressler (auth.), Corrado Priami (eds.)
The LNCS magazine Transactions on Computational platforms Biology is dedicated to inter- and multidisciplinary learn within the fields of desktop technological know-how and existence sciences. It helps a paradigmatic shift within the strategies from laptop and data technology to deal with the hot demanding situations coming up from the structures orientated viewpoint of organic phenomena.
The six papers chosen for this distinct factor are: Bio-inspired Network-Centric Operation and keep an eye on for Sensor/Actuator Networks; A Computationally quickly and Parametric version to Estimate Protein-Ligand Docking Time for Stochastic occasion established Simulation; Equation-Based Congestion keep an eye on within the web Biologic setting; Computational pondering in Biology; End-to-End info administration for platforms Biology; and a corrected model of: On Differentiation and Homeostatic Behaviours of Boolean Dynamical Systems
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We assume that as the kinetic energy, E, increases above EAct , the number of collisions that result in binding also increases [46]. Thus the probability for a binding to occur because of sufficient kinetic energy of the ligand molecule is given by: pr = E−EAct , E 0, for E > EAct otherwise (34) and the overall probability, po , for collision with sufficient energy is given by: po = p(binding, Collision) = pr × pc = Act ) pc (E−E , for E > EAct E 0, otherwise. The above equations assumed a fixed relative velocity U for the reaction.
These studies show that the TCP throughput is inversely proportional to end-to-end delay and to the square root of packet loss probability. Padhye [9] refined the model to capture the fast retransmit mechanism and the time-out effect, and achieved a more accurate formula. This equilibrium property of TCP Reno is used to define the notion of TCP–friendliness and motivates the equation based congestion control [10]. Misra [11, 12] proposed an ordinary differential equation model of the dynamics of TCP Reno, which is derived by studying congestion window size with a stochastic differential equation.
ECell: Software environment for whole cell simulation. Bioinformatics 15(1), 72–84 (1999) 38. : Jarnac: a system for interactive metabolic analysis. Animating the Cellular Map. In: 9th International BioThermoKinetics Meeting, Stellenbosch University Press, ch. 33, pp. 221–228 (2000) 39. : Modeling the Diffusion process in Stochastic Event based Simulation of the PhoPQ system. International Symposium on Computational Biology and Bioinformatics (ISBB), India (December 2006) 40. : Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes.